Publications by Computational Biology and Bioinformatics

Carrera Carrera, J. et al. (2023) “Real-time RT-PCR for Venezuelan equine encephalitis complex, Madariaga and Eastern equine encephalitis viruses: application in human and mosquito public health surveillance in Panama”, Journal of Clinical Microbiology [Preprint].

Ward, H. et al. (2023) “Design and implementation of a national program to monitor the prevalence of SARS-CoV-2 IgG antibodies in England using self-testing: the REACT-2 study”, American Journal of Public Health, 113(11), pp. 1201–1209.

He, Y. et al. (2023) “Robust Angular Synchronization via Directed Graph Neural Networks”, arXiv.

Saada, J. et al. (2023) “Inference of Coalescence Times and Variant Ages Using Convolutional Neural Networks”, Molecular Biology and Evolution, 40(10), p. msad211.

Temčinas, T., Nanda, V. and Reinert, G. (2023) “Goodness-of-fit via Count Statistics in Dense Random Simplicial Complexes.”

Yang, J. et al. (2023) “Determining herd immunity thresholds for hepatitis A virus transmission to inform vaccination strategies among people who inject drugs in 16 US states”, Clinical Infectious Diseases, 78(4), pp. 976–982.

Spoendlin, F. et al. (2023) “Improved computational epitope profiling using structural models identifies a broader diversity of antibodies that bind to the same epitope”, Frontiers in Molecular Biosciences, 10, p. 1237621.

Wharrie, S. et al. (2023) “HAPNEST: efficient, large-scale generation and evaluation of synthetic datasets for genotypes and phenotypes”, Bioinformatics, 39(9), p. btad535.

Crook, O. et al. (2023) “A Functional Bayesian Model for Hydrogen–Deuterium Exchange Mass Spectrometry”, Journal of Proteome Research, 22(9), pp. 2959–2972.

Carrera, J.-P. et al. (2023) “Madariaga and Venezuelan equine encephalitis virus seroprevalence in rodent enzootic hosts in Eastern and Western Panama.”, bioRxiv [Preprint].