Publications by Computational Biology and Bioinformatics

Quast, N., Deane, C. and Raybould, M. (2025) “STCRpy: a software suite for T cell receptor structure parsing, interaction profiling and machine learning dataset preparation”, bioRxiv.

Condado-Morales, I. et al. (2024) “A comparative study of the developability of full-length antibodies, fragments, and bispecific formats reveals higher stability risks for engineered constructs”, mAbs, 16(1), p. 2403156.

Mills, C. and Donnelly, C. (2024) “Climate-based modelling and forecasting of dengue fever in three endemic departments of Peru”, PLoS Neglected Tropical Diseases, 18(12).

Avalos-Pacheco, A. et al. (2024) “An almost infinite sites model”, Theoretical Population Biology, 160, pp. 49–61.

Hung, E., Mantziou, A. and Reinert, G. (2024) “A Bayesian mixture model for Poisson network autoregression.”

Mantziou, A. et al. (2024) “GDP nowcasting with large-scale inter-industry payment data in real time -- A network approach”, arXiv.

Erasmus, M. et al. (2024) “AIntibody: an experimentally validated in silico antibody discovery design challenge”, Nature Biotechnology, pp. 1–6.

Bajaj, S. et al. (2024) “COVID-19 testing and reporting behaviours in England across different sociodemographic groups: a population-based study using testing data and data from community prevalence surveillance surveys”, The Lancet Digital Health, 6(11), pp. e778 - e790.

Limnios, S. et al. (2024) “SaGess: A Sampling Graph Denoising Diffusion Model for Scalable Graph Generation”, in ECAI 2024. IOS Press.

Mills, C. et al. (2024) “The utility of wastewater surveillance for monitoring SARS-CoV-2 prevalence”, PNAS Nexus, 3(10).