Publications by Computational Biology and Bioinformatics

Watson, L. et al. (2024) “Jointly estimating epidemiological dynamics of Covid-19 from case and wastewater data in Aotearoa New Zealand”, Communications Medicine [Preprint].

Penn, M. et al. (2024) “Phylo2Vec: a vector representation for binary trees”, Systematic Biology, 74(2), pp. 250–266.

Singer, B. et al. (2024) “Comparing Phylogeographies to Reveal Incompatible Geographical Histories within Genomes”, Molecular Biology and Evolution, 41(7).

Lu, Y., Reinert, G. and Cucuringu, M. (2024) “Trade co-occurrence, trade flow decomposition, and conditional order imbalance in equity markets”, Quantitative Finance, 24(6), pp. 779–809.

Armbruster, S. and Reinert, G. (2024) “Network-based time series modeling for COVID-19 incidence in the Republic of Ireland”, Applied Network Science, 9(1).

Hayes, S. et al. (2024) “Modelling hepatitis C infection acquired from blood transfusions in the UK between 1970 and 1991 for the Infected Blood Inquiry”, Royal Society Open Science, 11(6).

Jiang, Y. et al. (2024) “Comprehensive Overview of Bottom-Up Proteomics Using Mass Spectrometry.”, ACS Measurement Science Au, 4(4), pp. 338–417.

Sanchez-Garcia, R. et al. (2024) “CESPED: A benchmark for supervised particle pose estimation in cryo-EM”, Physical Review Research, 6(2), p. 023245.

Gordon, G. et al. (2024) “Prospects for the computational humanization of antibodies and nanobodies”, Frontiers in Immunology, 15.

Mendes, C. et al. (2024) “CamTrapAsia: a dataset of tropical forest vertebrate communities from 239 camera trapping studies”, Ecology, 105(6).